STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_3977NTP pyrophosphohydrolase including oxidative damage repair enzyme; Function of strongly homologous gene; enzyme. (236 aa)    
Predicted Functional Partners:
nudF
ADP-ribose pyrophosphatase(NUDIX hydrolase domain,3-197); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
 
 0.920
prsA
Phosphoribosylpyrophosphate synthase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.
    
 0.908
pgm
Phosphoglucomutase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
     
  0.900
gpmA
Phosphoglyceromutase; Function of strongly homologous gene; enzyme; Belongs to the phosphoglycerate mutase family.
 
     0.804
UspA
Universal stress protein UspA; Function of strongly homologous gene; factor.
       0.774
XM1_3979
APH domain-containing protein; Homologs of previously reported genes of unknown function.
  
    0.596
dcd
Deoxycytidine triphosphate deaminase; Catalyzes the deamination of dCTP to dUTP.
       0.574
XM1_3981
Protein of unknown function(containing coiled-coil domain 15-39); No homology to any previously reported sequences.
       0.533
XM1_3982
Uncharacterized protein; No homology to any previously reported sequences.
 
     0.415
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.411
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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