STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_3979APH domain-containing protein; Homologs of previously reported genes of unknown function. (520 aa)    
Predicted Functional Partners:
czcC
Trehalose-6-phosphate phosphatase, biosynthetic; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
 
    0.938
dcd
Deoxycytidine triphosphate deaminase; Catalyzes the deamination of dCTP to dUTP.
       0.813
XM1_3981
Protein of unknown function(containing coiled-coil domain 15-39); No homology to any previously reported sequences.
       0.732
UspA
Universal stress protein UspA; Function of strongly homologous gene; factor.
  
    0.710
XM1_1469
P-type Ca2+ transporter type 2C; Function of strongly homologous gene; transporter.
 
  
 0.702
XM1_2567
Putative HAD superfamily P-type ATPase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
  
 0.696
XM1_1054
Putative phosphatase/phosphohexomutase(HAD-like domain,4-191); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
    0.685
cbbY
Haloacid dehalogenase-like hydrolase, protein CbbY, plasmid(HAD-like domain,1-211); Function of strongly homologous gene; enzyme.
  
    0.685
XM1_2582
Putative Signal transduction histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
  
 0.650
XM1_0739
Putative Ribonucleoside-diphosphate reductase; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen.
  
    0.613
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.