STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_3983Putative NosL family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative membrane component. (162 aa)    
Predicted Functional Partners:
XM1_3984
Uncharacterized protein; Homologs of previously reported genes of unknown function.
 
     0.916
XM1_3990
Protein of unknown function; No homology to any previously reported sequences.
 
     0.860
XM1_3992
ABC-type transport system, involved in lipoprotein release, permease component; Function of strongly homologous gene; transporter.
 
     0.860
XM1_3993
Protein of unknown function; No homology to any previously reported sequences.
 
     0.860
nosY
Membrane protein nosY; Function of strongly homologous gene; transporter.
 
 
 0.847
XM1_2145
Nitrous oxidase accessory protein; Homologs of previously reported genes of unknown function.
 
 
 0.826
XM1_3982
Uncharacterized protein; No homology to any previously reported sequences.
 
     0.802
XM1_3991
ABC-type antimicrobial peptide transport system, ATPase component; Function of strongly homologous gene; transporter.
 
     0.696
XM1_3985
Homologs of previously reported genes of unknown function.
 
     0.664
hypC
Hydrogenase expression/formation protein HypC; Function of homologous gene experimentally demonstrated in an other organism; factor.
  
     0.612
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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