STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_3989Putative thioredoxin-like fold; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (162 aa)    
Predicted Functional Partners:
XM1_3993
Protein of unknown function; No homology to any previously reported sequences.
 
     0.822
XM1_3990
Protein of unknown function; No homology to any previously reported sequences.
       0.797
XM1_3992
ABC-type transport system, involved in lipoprotein release, permease component; Function of strongly homologous gene; transporter.
       0.797
XM1_3994
Protein of unknown function; No homology to any previously reported sequences.
       0.796
XM1_3991
ABC-type antimicrobial peptide transport system, ATPase component; Function of strongly homologous gene; transporter.
       0.784
XM1_2138
Putative Thiol-disulfide isomeras and thioredoxin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
   
 0.763
XM1_3995
Protein of unknown function; No homology to any previously reported sequences.
       0.594
ribD
Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
 
   
 0.563
XM1_3988
Protein of unknown function; No homology to any previously reported sequences.
       0.523
XM1_3987
Protein of unknown function; No homology to any previously reported sequences.
       0.500
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.