STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_3992ABC-type transport system, involved in lipoprotein release, permease component; Function of strongly homologous gene; transporter. (377 aa)    
Predicted Functional Partners:
XM1_3991
ABC-type antimicrobial peptide transport system, ATPase component; Function of strongly homologous gene; transporter.
 
 
 0.974
XM1_3990
Protein of unknown function; No homology to any previously reported sequences.
 
     0.952
XM1_3993
Protein of unknown function; No homology to any previously reported sequences.
 
     0.952
XM1_3575
Putative transporter subunit: ATP-binding component of ABC superfamily transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
 0.945
lolD-2
Outer membrane-specific lipoprotein transporter subunit; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family.
  
 0.943
LolC
ABC-type transport system, permease component,Lipoprotein ABC transporter; Function of strongly homologous gene; transporter.
     
  0.900
XM1_3574
ABC transporter, permease protein; Function of strongly homologous gene; transporter.
     
  0.900
XM1_3984
Uncharacterized protein; Homologs of previously reported genes of unknown function.
 
     0.874
XM1_3983
Putative NosL family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative membrane component.
 
     0.860
XM1_3989
Putative thioredoxin-like fold; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.797
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.