STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_4039Putative helix-turn-helix XRE-family like protein (fragment); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (162 aa)    
Predicted Functional Partners:
XM1_4037
Protein of unknown function; No homology to any previously reported sequences.
       0.773
XM1_4042
Putative transposase (Bacteriophage Mu, transposase 25-230; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.
       0.534
XM1_4040
Putative transcriptional regulator, Nlp; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
       0.533
XM1_4041
Putative ParB-like protein (nuclease); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative cell process.
       0.520
XM1_4035
Protein of unknown function; No homology to any previously reported sequences.
       0.505
XM1_4044
Putative phage-related conserved protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.
  
  
 0.444
XM1_4043
Putative phage DNA transposition protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.
       0.434
XM1_4045
Putative transcriptional regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
       0.428
XM1_4046
Homologs of previously reported genes of unknown function.
       0.428
XM1_4047
Conserved protein of unknown function (Chromosomal replication initiator, DnaA C-terminal 2-93); Homologs of previously reported genes of unknown function.
       0.428
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.