STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_4041Putative ParB-like protein (nuclease); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative cell process. (282 aa)    
Predicted Functional Partners:
XM1_4042
Putative transposase (Bacteriophage Mu, transposase 25-230; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.
 
     0.951
XM1_4043
Putative phage DNA transposition protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.
 
     0.863
XM1_4045
Putative transcriptional regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
     0.857
XM1_4049
Putative phage capsid protein (Mu-like phage); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.
 
     0.856
XM1_4044
Putative phage-related conserved protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.
 
   
 0.837
XM1_4040
Putative transcriptional regulator, Nlp; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
       0.796
XM1_4059
Putative Mu-like prophage protein gp16; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.
 
     0.730
XM1_4072
Mu-like prophage FluMu protein gp29; Function of strongly homologous gene; extrachromosomal origin.
 
     0.727
XM1_4076
Mu-like prophage FluMu major head subunit; Function of strongly homologous gene; extrachromosomal origin.
  
   
 0.710
XM1_4071
Putative Mu-like prophage FluMu protein gp28; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.
 
     0.703
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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