STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_4088Protein of unknown function （phage baseplate assembly protein V） No homology to any previously reported sequences. (186 aa)    
Predicted Functional Partners:
XM1_4089
Putative Phage Protein gp46; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.
 
    0.967
XM1_4086
Putative DNA circulation family protein （Mu-like prophage） Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.
 
    0.962
XM1_4087
Putative bacteriophage Baseplate protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.
 
    0.961
XM1_4091
Putative bacteriophage tail protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.
 
    0.955
XM1_4090
Phage Baseplate J-like protein; Function of strongly homologous gene; extrachromosomal origin.
 
    0.952
XM1_4082
Bacteriophage Mu tail sheath; Function of strongly homologous gene; extrachromosomal origin.
 
  
 0.889
XM1_4085
PhageMin_Tail domain-containing protein; Homologs of previously reported genes of unknown function.
 
     0.888
XM1_4092
Protein of unknown function (Putative phage tail protein); No homology to any previously reported sequences.
       0.796
XM1_4093
Protein of unknown function (bacteriophge tail fiber protein); No homology to any previously reported sequences.
       0.779
XM1_4094
Protein of unknown function (putative phage tail fiber protein); No homology to any previously reported sequences.
       0.756
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.