STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_4095D12 class N6 adenine-specific DNA methyltransferase; Function of strongly homologous gene; enzyme. (275 aa)    
Predicted Functional Partners:
XM1_2957
Putative site-specific DNA methylase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
  
  0.965
XM1_0461
Putative Site-specific DNA methylase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
  
 
0.929
XM1_2831
Protein of unknown function; No homology to any previously reported sequences.
  
  
  0.920
XM1_4087
Putative bacteriophage Baseplate protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.
 
    0.794
XM1_4090
Phage Baseplate J-like protein; Function of strongly homologous gene; extrachromosomal origin.
 
    0.746
XM1_4085
PhageMin_Tail domain-containing protein; Homologs of previously reported genes of unknown function.
 
    0.727
XM1_4091
Putative bacteriophage tail protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.
 
     0.725
XM1_4071
Putative Mu-like prophage FluMu protein gp28; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.
 
    0.698
XM1_4073
Phage head morphogenesis protein; Function of strongly homologous gene; extrachromosomal origin.
 
     0.670
XM1_4042
Putative transposase (Bacteriophage Mu, transposase 25-230; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.
  
     0.668
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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