STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_4109Homologs of previously reported genes of unknown function. (261 aa)    
Predicted Functional Partners:
XM1_4110
Signal transduction histidine kinase; Function of strongly homologous gene; enzyme.
       0.773
XM1_3692
Protein of unknown function; No homology to any previously reported sequences.
  
     0.752
XM1_2859
Homologs of previously reported genes of unknown function.
  
     0.561
XM1_0585
Homologs of previously reported genes of unknown function.
  
     0.554
XM1_0773
Homologs of previously reported genes of unknown function.
 
    0.538
czcB-3
Putative Flagellar hook capping protein flgD; Required for flagellar hook formation. May act as a scaffolding protein.
  
   0.537
XM1_3712
Flagellar capping protein; Function of strongly homologous gene; structure.
 
    0.525
serC
Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine.
       0.517
XM1_0774
Putative lipopolysaccharide core biosynthesis; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
    0.489
serA
D-3-phosphoglycerate dehydrogenase; Function of strongly homologous gene; enzyme; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
 
     0.483
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.