STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_4144Indolepyruvate oxidoreductase subunit lorB; Function of strongly homologous gene; enzyme. (206 aa)    
Predicted Functional Partners:
iorA-2
Indolepyruvate oxidoreductase subunit IorA; Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates.
 
 
 0.973
ydbK
Putative 2-oxoacid-flavodoxin fused oxidoreductase:conserved protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 
 0.968
XM1_1074
Indolepyruvate ferredoxin oxidoreductase; Function of strongly homologous gene; enzyme.
 
 
 0.841
padI
NADH-dependent phenylglyoxylate dehydrogenase subunit beta; Function of strongly homologous gene; enzyme.
 
 
 0.791
XM1_2901
Putative 2-oxoglutarate ferredoxin oxidoreductase beta subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 
 0.754
XM1_2900
Putative 2-oxoglutarate ferredoxin oxidoreductase alpha subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 
 0.668
padG
NADH-dependent phenylglyoxylate dehydrogenase subunit alpha; Function of strongly homologous gene; enzyme.
 
 
 0.627
XM1_2913
Putative indole pyruvate ferredoxin/flavodoxin oxidoreductase subunit iorA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 
0.576
XM1_4145
Putative chemotaxis protein CheY; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
       0.545
fumA
Fumarate hydratase (fumarase A), aerobic Class I; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
     
 0.499
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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