STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_4151Homologs of previously reported genes of unknown function. (218 aa)    
Predicted Functional Partners:
qseB
DNA-binding response regulator in two-component regulatory system with QseC; Function of homologous gene experimentally demonstrated in an other organism; regulator.
       0.758
XM1_4153
Putative regulator two-component hybrid sensor and regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
       0.752
XM1_2364
Homologs of previously reported genes of unknown function.
  
     0.607
XM1_2360
Putative CheY-like receiver; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative receptor.
  
     0.604
rne
Ribonuclease E; Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs. Belongs to the RNase E/G family. RNase E subfamily.
       0.600
XM1_0356
Conserved protein of unknown function（Ferritin/ribonucleotide reductase-like） Homologs of previously reported genes of unknown function.
  
     0.589
XM1_4438
Homologs of previously reported genes of unknown function.
  
     0.541
XM1_4479
Homologs of previously reported genes of unknown function.
  
     0.535
XM1_1369
Putative Flp pilus assembly protein TadG; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative membrane component.
  
   
 0.520
czcC-3
Putative Flagellar hook-length control protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.
  
     0.496
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.