STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_4163Putative Poly(Beta-D-mannuronate) C5 epimerase 2; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (1060 aa)    
Predicted Functional Partners:
XM1_4165
Putative ABC transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
  
 0.788
bepC
Outer membrane efflux protein; Function of strongly homologous gene; transporter.
 
  
 0.759
XM1_1704
Homologs of previously reported genes of unknown function.
 
     0.739
XM1_1663
ABC-type protease/lipase transport system, ATPase and permease component protein; Function of strongly homologous gene; transporter.
 
  
 0.707
XM1_3260
Putative ABC transporter related; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
  
 0.689
XM1_3261
Putative ABC transporter, ATP-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
  
 0.674
XM1_3297
Protein of unknown function; No homology to any previously reported sequences.
  
     0.671
XM1_0271
Conserved protein of unknown function,containing haemolysin-type calcium-binding domain NodA; Homologs of previously reported genes of unknown function.
 
  
0.670
XM1_2520
Putative ATP-binding cassette subfamily C; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
  
 0.656
XM1_1837
Homologs of previously reported genes of unknown function.
 
     0.653
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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