STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_4208Conserved protein of unknown function (Putative SET domain protein); Homologs of previously reported genes of unknown function. (166 aa)    
Predicted Functional Partners:
atpD
Membrane-bound ATP synthase, F1 sector, beta-subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
    
 0.826
XM1_2760
Putative Histone deacetylase superfamily protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 0.799
XM1_4207
Putative Orn/DAP/Arg decarboxylase 2; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.784
XM1_1783
Homologs of previously reported genes of unknown function.
    
 0.774
XM1_1756
Putative Helicase(SNF2-related,6-226)1; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 0.723
XM1_2809
Putative Helicase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 0.723
cobB-2
Deacetylase of acetyl-CoA synthetase, NAD-dependent(Sirtuin family,7-234); Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the sirtuin family. Class III subfamily.
    
 0.683
rpoA
RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.666
XM1_4448
DnaJ-class molecular chaperone; Function of strongly homologous gene; factor.
    
 0.666
XM1_0183
Conserved protein of unknown function（DnaJ N-terminal domain-containing protein） Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.
    
 0.658
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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