STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_4234Putative carboxymuconolactone decarboxylase; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family. (119 aa)    
Predicted Functional Partners:
XM1_4233
Putative transporter component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative membrane component.
       0.795
XM1_4232
Putative membrane protein (Sulphur transport domain 82-123); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative membrane component.
       0.794
purB
Adenylosuccinate lyase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
  
 
 0.791
XM1_1089
Homologs of previously reported genes of unknown function.
  
  
 0.603
mmsB
3-hydroxyisobutyrate dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
  
 0.603
XM1_4231
Putative transcriptional regulator, Crp/Fnr family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
       0.590
yqjM
NADPH-dependent flavin oxidoreductase; Function of strongly homologous gene; enzyme.
     
 0.492
XM1_4235
Homologs of previously reported genes of unknown function.
       0.476
XM1_4163
Putative Poly(Beta-D-mannuronate) C5 epimerase 2; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
   
    0.438
XM1_4304
Conserved protein of unknown function (Concanavalin A-like lectin/glucanases superfamily; Homologs of previously reported genes of unknown function.
   
    0.438
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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