STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_4243Putative taurine catabolism dioxygenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (288 aa)    
Predicted Functional Partners:
dsrB
Sulfite reductase, dissimilatory-type subunit beta; Function of strongly homologous gene; enzyme.
 
     0.870
dsrA
Sulfite reductase, dissimilatory-type subunit alpha; Function of strongly homologous gene; enzyme.
 
     0.869
dsrF
Intracellular sulfur oxidation protein DsrF/TusC; Function of strongly homologous gene; enzyme.
 
     0.855
tusD
Methylsulfur transfer protein; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
     0.844
tusB
Methylsulfur transfer protein DsrH/TusB; Function of strongly homologous gene; transporter.
 
     0.839
XM1_4250
Putative Hdr-like menaquinol oxidoreductase cytochrome b-like subunit (DsrM); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.817
hmeD
Hdr-like menaquinol oxidoreductase iron-sulfur subunit 2 (DsrK); Function of strongly homologous gene; enzyme.
 
     0.813
XM1_4253
Putative Hdr-like menaquinol oxidoreductase cytochrome c subunit (DsrJ/HmeE); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.811
XM1_4242
Homologs of previously reported genes of unknown function.
       0.806
XM1_4255
Putative Hdr-like menaquinol oxidoreductase integral membrane subunit (HmeB/DsrP); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative cell process.
 
     0.806
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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