STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_4291Protein of unknown function; No homology to any previously reported sequences. (75 aa)    
Predicted Functional Partners:
XM1_4292
GCN5-related N-acetyltransferase; Function of strongly homologous gene; enzyme.
       0.572
XM1_4293
Putative HTH-type transcriptional regulator BadM; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
       0.572
hoxY
NAD-reducing hydrogenase HoxS subunit delta (HoxY); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
       0.547
hoxU
NAD-reducing hydrogenase HoxS subunit gamma (HoxU); Function of strongly homologous gene; enzyme.
       0.547
hoxF
NAD-reducing hydrogenase HoxS subunit alpha (HoxF); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
       0.547
XM1_4286
Putative [NiFe] hydrogenase (HoxH-specific) C-terminal protease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.532
hoxH
NAD-reducing hydrogenase HoxS subunit beta (HoxH); Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.
       0.532
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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