STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
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[Homology]
Score
XM1_4293Putative HTH-type transcriptional regulator BadM; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (136 aa)    
Predicted Functional Partners:
XM1_4292
GCN5-related N-acetyltransferase; Function of strongly homologous gene; enzyme.
 
 
 
 0.940
XM1_4291
Protein of unknown function; No homology to any previously reported sequences.
       0.572
nifS
Cysteine desulfurase; Function of strongly homologous gene; enzyme.
  
  
 0.499
iscS
Cysteine desulfurase (tRNA sulfurtransferase), PLP-dependent; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily.
  
  
 0.499
XM1_2905
Conserved protein of unknown function (Acyl-CoA N-acyltransferase 1-146; Homologs of previously reported genes of unknown function.
 
 
   0.460
XM1_1957
Putative BadM/Rrf2 family transcriptional regulator (Transcription regulator Rrf2-like,5-143); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
  
     0.458
fixN
Cytochrome C oxydase, CytN subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the heme-copper respiratory oxidase family.
  
  
 0.445
bcrB
Benzoyl-CoA reductase subunit B; Function of strongly homologous gene; enzyme.
  
     0.433
XM1_3815
Uncharacterized protein; Homologs of previously reported genes of unknown function.
  
     0.429
hoxY
NAD-reducing hydrogenase HoxS subunit delta (HoxY); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
       0.425
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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