XM1_4298 protein (Magnetospirillum sp. XM1) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

XM1_4298

Homologs of previously reported genes of unknown function. (519 aa)

Predicted Functional Partners:

XM1_0218

0.815

XM1_3633

0.775

XM1_2052

0.766

XM1_4513

0.765

XM1_1187

0.758

XM1_2915

0.756

XM1_0773

0.750

XM1_2050

0.749

XM1_0183

0.744

XM1_3060

0.736

Your Current Organism:

Magnetospirillum sp. XM1

NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
XM1_0183	XM1_0218	Conserved protein of unknown function（DnaJ N-terminal domain-containing protein） Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.	Putative Outer membrane protein A; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.	0.414
XM1_0183	XM1_0773	Conserved protein of unknown function（DnaJ N-terminal domain-containing protein） Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.	Homologs of previously reported genes of unknown function.	0.759
XM1_0183	XM1_1187	Conserved protein of unknown function（DnaJ N-terminal domain-containing protein） Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.	Homologs of previously reported genes of unknown function.	0.737
XM1_0183	XM1_2050	Conserved protein of unknown function（DnaJ N-terminal domain-containing protein） Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.	Putative Predicted membrane protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative membrane component.	0.803
XM1_0183	XM1_2052	Conserved protein of unknown function（DnaJ N-terminal domain-containing protein） Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.	Homologs of previously reported genes of unknown function.	0.782
XM1_0183	XM1_2915	Conserved protein of unknown function（DnaJ N-terminal domain-containing protein） Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.	Homologs of previously reported genes of unknown function.	0.766
XM1_0183	XM1_3060	Conserved protein of unknown function（DnaJ N-terminal domain-containing protein） Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.	Putative sel1-like repeat protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; phenotype.	0.772
XM1_0183	XM1_3633	Conserved protein of unknown function（DnaJ N-terminal domain-containing protein） Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.	Protein of unknown function; No homology to any previously reported sequences.	0.784
XM1_0183	XM1_4298	Conserved protein of unknown function（DnaJ N-terminal domain-containing protein） Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.	Homologs of previously reported genes of unknown function.	0.744
XM1_0183	XM1_4513	Conserved protein of unknown function（DnaJ N-terminal domain-containing protein） Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.	Conserved protein of unknown function (Staphylococcal nuclease 40-167); Homologs of previously reported genes of unknown function.	0.766
XM1_0218	XM1_0183	Putative Outer membrane protein A; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.	Conserved protein of unknown function（DnaJ N-terminal domain-containing protein） Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.	0.414
XM1_0218	XM1_3060	Putative Outer membrane protein A; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.	Putative sel1-like repeat protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; phenotype.	0.781
XM1_0218	XM1_4298	Putative Outer membrane protein A; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.	Homologs of previously reported genes of unknown function.	0.815
XM1_0773	XM1_0183	Homologs of previously reported genes of unknown function.	Conserved protein of unknown function（DnaJ N-terminal domain-containing protein） Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative structure.	0.759
XM1_0773	XM1_1187	Homologs of previously reported genes of unknown function.	Homologs of previously reported genes of unknown function.	0.767
XM1_0773	XM1_2050	Homologs of previously reported genes of unknown function.	Putative Predicted membrane protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative membrane component.	0.765
XM1_0773	XM1_2052	Homologs of previously reported genes of unknown function.	Homologs of previously reported genes of unknown function.	0.773
XM1_0773	XM1_2915	Homologs of previously reported genes of unknown function.	Homologs of previously reported genes of unknown function.	0.761
XM1_0773	XM1_3060	Homologs of previously reported genes of unknown function.	Putative sel1-like repeat protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; phenotype.	0.674
XM1_0773	XM1_3633	Homologs of previously reported genes of unknown function.	Protein of unknown function; No homology to any previously reported sequences.	0.772