STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rubBRubredoxin-NAD(+) reductase; Function of strongly homologous gene; enzyme. (386 aa)    
Predicted Functional Partners:
rubA
Rubredoxin; Function of homologous gene experimentally demonstrated in an other organism; carrier.
 
 
 0.969
nirD
Assimilatory nitrite reductase [NAD(P)H] small subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
 
 0.800
XM1_0418
Putative Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 
 0.731
XM1_4312
Putative rubrerythrin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.
 
   
 0.720
XM1_3479
Hydrogenase expression/formation protein hupT; Function of strongly homologous gene; phenotype.
  
 
 0.704
XM1_4309
Cytochrome c2 iso-2; Function of strongly homologous gene; enzyme.
     
 0.605
gltB
Glutamate synthase (NADPH) large chain; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
  
 0.521
gltB-3
Glutamate synthase, large subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
  
 0.521
phpC
Phosphonoacetaldehyde reductase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
  
 0.487
XM1_0384
Homologs of previously reported genes of unknown function.
  
  
 0.453
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.