STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rubARubredoxin; Function of homologous gene experimentally demonstrated in an other organism; carrier. (54 aa)    
Predicted Functional Partners:
rubB
Rubredoxin-NAD(+) reductase; Function of strongly homologous gene; enzyme.
 
 
 0.969
XM1_2178
Putative NAD(FAD)-dependent dehydrogenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 
 0.806
XM1_2179
Putative NADH dependant phenylglyoxylate; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 
 0.806
padH
NADH-dependent phenylglyoxylate dehydrogenase subunit epsilon; Function of strongly homologous gene; enzyme.
 
 
 0.803
XM1_4312
Putative rubrerythrin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.
 
  
 0.792
nirB
Nitrite reductase, large subunit, NAD(P)H-binding; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
  
 
 0.776
XM1_4309
Cytochrome c2 iso-2; Function of strongly homologous gene; enzyme.
       0.600
ydbK
Putative 2-oxoacid-flavodoxin fused oxidoreductase:conserved protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
     
 0.539
hyaA
Hydrogenase 1, small subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
 
 0.516
hupS
Uptake hydrogenase small subunit; Function of strongly homologous gene; putative enzyme.
  
 
 0.516
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.