STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_4312Putative rubrerythrin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor. (158 aa)    
Predicted Functional Partners:
rubA
Rubredoxin; Function of homologous gene experimentally demonstrated in an other organism; carrier.
 
  
 0.792
XM1_2009
Homologs of previously reported genes of unknown function.
 
   
 0.783
XM1_2010
Putative Fe-S oxidoreductase; Function of strongly homologous gene; putative enzyme.
 
  
 0.765
rubB
Rubredoxin-NAD(+) reductase; Function of strongly homologous gene; enzyme.
 
   
 0.720
XM1_4313
Putative multidrug efflux outer membrane protein, RND family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
    0.537
XM1_4309
Cytochrome c2 iso-2; Function of strongly homologous gene; enzyme.
       0.507
ydbK
Putative 2-oxoacid-flavodoxin fused oxidoreductase:conserved protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
  
 0.475
ahpC
Alkyl hydroperoxide reductase, C22 subunit, thioredoxin-like (detoxification of hydroperoxides); Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily.
  
  
 0.429
ahpC-2
Alkyl hydroperoxide reductase, C22 subunit; Function of strongly homologous gene; enzyme.
  
  
 0.429
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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