STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpfGCyclic di-GMP phosphodiesterase response regulator RpfG; Function of strongly homologous gene; regulator. (339 aa)    
Predicted Functional Partners:
XM1_1318
Putative Response regulator（GGDEF domain,147-323） Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
    0.920
XM1_4319
Putative signal transduction histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
0.883
XM1_2647
Putative Response regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
    0.841
XM1_3971
Putative diguanylate cyclase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 0.839
XM1_4334
Putative response regulator containing a CheY-like receiver domain and a GGDEF domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
 0.810
XM1_4318
Conserved protein of unknown function (FIST domain 24-216; Homologs of previously reported genes of unknown function.
    
 0.786
XM1_2972
Putative two component diguanylate cyclase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative receptor.
 
 0.690
XM1_1590
Homologs of previously reported genes of unknown function.
 
 
 0.671
XM1_4030
Putative hybrid sensor and regulator (Signal transduction histidine kinase, homodimeric 904-989; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
 
0.660
XM1_2449
Putative hybrid sensor and regulator (fragment); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
 
0.659
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
Server load: medium (58%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.