STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_4347Putative protein tyrosine phosphatase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (190 aa)    
Predicted Functional Partners:
nifA
Mo/Fe nitrogenase specific transcriptional regulator, NifA; Function of strongly homologous gene; regulator.
       0.784
XM1_1414
Homologs of previously reported genes of unknown function.
  
     0.637
XM1_0312
Putative SAM-dependent methyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.519
XM1_1481
Homologs of previously reported genes of unknown function.
  
     0.516
XM1_0623
Homologs of previously reported genes of unknown function.
  
     0.507
XM1_0624
Homologs of previously reported genes of unknown function.
  
     0.498
XM1_1138
Homologs of previously reported genes of unknown function.
  
     0.483
XM1_4345
Homologs of previously reported genes of unknown function.
       0.479
XM1_0626
Homologs of previously reported genes of unknown function.
  
     0.463
XM1_4344
Homologs of previously reported genes of unknown function.
 
     0.455
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.