STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_4352Signal transduction histidine kinase; Function of strongly homologous gene; enzyme. (547 aa)    
Predicted Functional Partners:
rcp-4
Two-component response regulator (CheY-like); Function of strongly homologous gene; regulator.
 
     0.948
XM1_3873
Signal transduction response regulator, CheY-like response regulator; Function of strongly homologous gene; regulator.
 
 
 0.802
rcp-3
Two-component response regulator (CheY-like); Function of strongly homologous gene; regulator.
 
     0.779
rcp
Response regulator rcp1; Function of homologous gene experimentally demonstrated in an other organism; regulator.
 
     0.777
rcp-2
Response regulator rcp1; Function of strongly homologous gene; regulator.
 
     0.777
XM1_2061
Putative Signal transduction histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 
 
0.669
XM1_4319
Putative signal transduction histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 
 
0.660
XM1_1590
Homologs of previously reported genes of unknown function.
 
 
 
0.655
XM1_3256
Protein of unknown function; No homology to any previously reported sequences.
 
 
 
0.647
XM1_3114
Putative signal transduction histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 
 
0.633
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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