STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mreCCell shape-determining protein MreC; Involved in formation and maintenance of cell shape. (295 aa)    
Predicted Functional Partners:
XM1_4389
Cell shape determining protein MreD; Function of strongly homologous gene; structure.
 
 
 0.992
mreB
Cell wall structural complex MreBCD, actin-like component MreB; Function of homologous gene experimentally demonstrated in an other organism; structure.
 
 
 0.987
mrdA
Cell division protein FtsI/penicillin-binding protein 2; Function of strongly homologous gene; enzyme.
 
 
 0.972
mrdB
Cell wall shape-determining protein mrdB; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.
 
  
 0.939
mamK
Magnetosome cytoskeleton protein MamK; Function of strongly homologous gene; putative enzyme.
 
 
 0.906
XM1_3827
Protein of unknown function; No homology to any previously reported sequences.
 
 
 
 0.796
XM1_2803
Protein of unknown function; No homology to any previously reported sequences.
  
  
 0.697
radC
DNA repair protein RadC homolog radC; Function of strongly homologous gene; enzyme.
  
  
 0.697
ftsI
Cell division protein FtsI (penicillin-binding protein 3); Function of strongly homologous gene; enzyme.
  
 
 0.684
XM1_0875
Homologs of previously reported genes of unknown function.
  
     0.666
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.