STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_4403TonB-dependent receptor; Function of strongly homologous gene; receptor. (701 aa)    
Predicted Functional Partners:
XM1_4404
Conserved exported protein of unknown function (Sialidases 52-296); Homologs of previously reported genes of unknown function.
 
 
 
 0.899
XM1_4405
Periplasmic protein TonB; Function of strongly homologous gene; membrane component.
   
 
 0.894
exbB
Biopolymer transport protein ExbB; Function of strongly homologous gene; transporter.
     
 0.799
exbD
Biopolymer transport protein exbD1; Function of strongly homologous gene; transporter.
     
 0.796
exbD2
Biopolymer transport protein exbD2; Function of strongly homologous gene; transporter.
     
 0.776
XM1_4402
Homologs of previously reported genes of unknown function.
       0.618
XM1_2535
Homologs of previously reported genes of unknown function.
  
 
 
 0.575
mamJ
Magnetosome protein MamJ; Function of strongly homologous gene; transporter.
   
 
 0.552
XM1_4122
Periplasmic protein TonB, links inner and outer membranes; Function of strongly homologous gene; membrane component.
   
 
 0.552
XM1_4543
Putative TonB family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
   
 
 0.552
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.