STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_4404Conserved exported protein of unknown function (Sialidases 52-296); Homologs of previously reported genes of unknown function. (408 aa)    
Predicted Functional Partners:
XM1_4403
TonB-dependent receptor; Function of strongly homologous gene; receptor.
 
 
 
 0.899
XM1_4405
Periplasmic protein TonB; Function of strongly homologous gene; membrane component.
 
   
 0.840
exbB
Biopolymer transport protein ExbB; Function of strongly homologous gene; transporter.
 
     0.812
XM1_3559
Putative thiol-disulfide isomerase/thioredoxins-like; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
   
 0.806
exbD2
Biopolymer transport protein exbD2; Function of strongly homologous gene; transporter.
 
     0.793
exbD
Biopolymer transport protein exbD1; Function of strongly homologous gene; transporter.
       0.784
XM1_4402
Homologs of previously reported genes of unknown function.
       0.627
XM1_1119
Copper resistance D domain-containing protein(Copper resistance D,193-288); Function of strongly homologous gene; transporter.
  
     0.611
hoxX
Hydrogenase maturation factor HoxX; Function of homologous gene experimentally demonstrated in an other organism; factor; Belongs to the enoyl-CoA hydratase/isomerase family.
  
     0.608
XM1_4542
TonB-dependent receptor; Function of strongly homologous gene; transporter.
   
 
 0.559
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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