STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_4427Putative TonB-dependent receptor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (668 aa)    
Predicted Functional Partners:
XM1_4304
Conserved protein of unknown function (Concanavalin A-like lectin/glucanases superfamily; Homologs of previously reported genes of unknown function.
 
 
 
 0.885
XM1_4405
Periplasmic protein TonB; Function of strongly homologous gene; membrane component.
 
 
 0.837
XM1_0271
Conserved protein of unknown function,containing haemolysin-type calcium-binding domain NodA; Homologs of previously reported genes of unknown function.
  
 
 
 0.803
mamJ
Magnetosome protein MamJ; Function of strongly homologous gene; transporter.
  
 
 0.784
XM1_4122
Periplasmic protein TonB, links inner and outer membranes; Function of strongly homologous gene; membrane component.
  
 
 0.784
XM1_4543
Putative TonB family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
 
 0.784
XM1_4426
Putative signal transduction histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative receptor.
 
     0.768
XM1_1275
Conserved protein of unknown function（NERD,16-109） Homologs of previously reported genes of unknown function.
  
     0.753
XM1_4209
Putative adenylate cyclase (Partial); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.731
XM1_2337
Homologs of previously reported genes of unknown function.
  
     0.730
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
Server load: medium (52%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.