STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phbBAcetoacetyl-CoA reductase phbB; Function of strongly homologous gene; enzyme. (240 aa)    
Predicted Functional Partners:
phbA
Acetyl-CoA acetyltransferase phbA; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the thiolase-like superfamily. Thiolase family.
 0.980
XM1_4432
Putative poly-beta-hydroxybutyrate polymerase C; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 
 0.980
phbC
Poly-beta-hydroxybutyrate polymerase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
 
 0.975
phaJ
(R)-specific enoyl-CoA hydratase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
 0.941
fadB
3-hydroxyacyl-CoA dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.927
atoB
acetyl-CoA acetyltransferase(Thiolase,4-394); Function of homologous gene experimentally demonstrated in an other organism; carrier; Belongs to the thiolase-like superfamily. Thiolase family.
 
 0.921
XM1_2284
Putative MaoC-like dehydratase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 0.920
atoA
acetoacetyl-CoA transferase, beta subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
 0.915
XM1_2487
Putative Beta-oxoacyl-CoA thiolase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.915
mmgB
3-hydroxybutyryl-CoA dehydrogenase(3-hydroxyacyl-CoA dehydrogenase, NAD binding,6-184); Function of strongly homologous gene; enzyme.
  
 0.914
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
Server load: medium (50%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.