STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_4432Putative poly-beta-hydroxybutyrate polymerase C; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (394 aa)    
Predicted Functional Partners:
phbB
Acetoacetyl-CoA reductase phbB; Function of strongly homologous gene; enzyme.
 
 
 0.980
phaZ
Putative SOS mutagenesis and repair protein UmuD (fragment); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
  
 0.937
phaJ
(R)-specific enoyl-CoA hydratase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
  
 0.934
phbC
Poly-beta-hydroxybutyrate polymerase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
  
 
0.928
XM1_4435
Putative polyhydroxyalkanoate synthesis repressor PhaR-like; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
   
 0.911
XM1_4433
Homologs of previously reported genes of unknown function.
       0.784
XM1_4434
Protein of unknown function; No homology to any previously reported sequences.
       0.773
mms
Magnetic particle membrane specific GTPase P16; Function of strongly homologous gene; enzyme.
 
  
 0.709
phbA
Acetyl-CoA acetyltransferase phbA; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the thiolase-like superfamily. Thiolase family.
 
  
 0.659
XM1_1348
Putative phasin family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
  
 0.601
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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