STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_4438Homologs of previously reported genes of unknown function. (190 aa)    
Predicted Functional Partners:
lspA
Lipoprotein signal peptidase lspA; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.
     
 0.845
ileS
isoleucyl-tRNA synthetase ileS; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 1 subfamily.
       0.828
ribF
Bifunctional riboflavin kinase and FAD synthetase ribF; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the ribF family.
       0.828
XM1_0875
Homologs of previously reported genes of unknown function.
  
     0.773
XM1_4479
Homologs of previously reported genes of unknown function.
  
     0.772
XM1_4389
Cell shape determining protein MreD; Function of strongly homologous gene; structure.
  
     0.759
XM1_1420
Uncharacterized protein; Homologs of previously reported genes of unknown function.
  
     0.750
XM1_1671
Putative Rad3-related DNA helicase(ATP-dependent helicase, C-terminal,743-881); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.718
XM1_3132
Conserved protein of unknown function(containing Lipoprotein SmpA/OmlA domain,31-106;); Homologs of previously reported genes of unknown function.
  
     0.691
XM1_1967
Uncharacterized protein; Homologs of previously reported genes of unknown function.
  
     0.688
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.