STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_4458Conserved protein of unknown function (DR1885-like metal-binding protein 1-147); Homologs of previously reported genes of unknown function. (207 aa)    
Predicted Functional Partners:
petA
Ubiquinol-cytochrome c reductase iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 
 0.814
XM1_0305
Cytochrome b/c1; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 
 0.758
ompR-2
DNA-binding response regulator in two-component regulatory system with EnvZ; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
   
 0.752
XM1_2139
Homologs of previously reported genes of unknown function.
 
   
 0.731
yfeX
Deferrochelatase/peroxidase YfeX; Function of strongly homologous gene; putative enzyme.
 
    0.710
XM1_1118
Conserved exported protein of unknown function(Immunoglobulin E-set,23-116); Homologs of previously reported genes of unknown function.
  
    0.678
XM1_3045
Cytochrome b subunit of the bc complex; Function of strongly homologous gene; enzyme.
   
 
 0.655
ctaE
Cytochrome c oxidase subunit III; Function of strongly homologous gene; enzyme.
  
   0.653
norE
Cytochrome c oxidase, subunit III (NorE protein involved in nitric oxide reduction); Function of strongly homologous gene; enzyme.
  
   0.653
ctaD
Cytochrome c oxidase, subunit I; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.
  
   0.650
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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