STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_4479Homologs of previously reported genes of unknown function. (181 aa)    
Predicted Functional Partners:
XM1_4438
Homologs of previously reported genes of unknown function.
  
     0.772
XM1_0875
Homologs of previously reported genes of unknown function.
  
     0.695
XM1_1666
Homologs of previously reported genes of unknown function.
  
     0.679
XM1_1913
Putative membrane protein（Outer membrane protein, OmpA/MotB, C-terminal,316-398） Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative membrane component.
  
     0.679
XM1_1267
Putative ADP-heptose of LPS heptosyltransferase（Glycosyl transferase, family 9,73-282） Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.667
XM1_4374
Homologs of previously reported genes of unknown function.
  
     0.660
ispH
1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase, 4Fe-4S protein ispH; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.
       0.634
XM1_1462
Homologs of previously reported genes of unknown function.
  
     0.633
XM1_1442
Putative FOG: TPR repeat(Tetratricopeptide-like helica,65-237); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative cell process.
  
     0.631
XM1_1420
Uncharacterized protein; Homologs of previously reported genes of unknown function.
  
     0.627
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.