STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_4486Conserved protein of unknown function (Pentapeptide repeat-like 16-150); Homologs of previously reported genes of unknown function. (164 aa)    
Predicted Functional Partners:
XM1_4485
Putative diguanylate cyclase (GGDEF) domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.764
XM1_4484
Putative CheY-like receiver; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative receptor.
  
   0.581
XM1_4487
Putative TPR repeat-containing protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
       0.554
XM1_0611
Homologs of previously reported genes of unknown function.
  
 
   0.527
XM1_0015
Putative site-specific recombinase, resolvase family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 
 
 0.495
XM1_4483
Homologs of previously reported genes of unknown function.
       0.490
XM1_2197
Homologs of previously reported genes of unknown function.
  
     0.484
XM1_0470
Homologs of previously reported genes of unknown function.
  
     0.464
XM1_2083
Homologs of previously reported genes of unknown function.
 
    0.432
gyrB
Protein of unknown function; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.
   
 
 0.426
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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