STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_4499Putative short-chain dehydrogenase/reductase SDR family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (252 aa)    
Predicted Functional Partners:
XM1_4497
Putative nucleotidyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.814
XM1_4498
Homologs of previously reported genes of unknown function.
       0.791
XM1_2652
Putative Phenolpthiocerol synthesis polyketide synthase ppsA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 
 0.713
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
  
    0.667
XM1_4496
Homologs of previously reported genes of unknown function.
  
    0.664
XM1_2476
Putative 3-oxoacyl-[acyl-carrier-protein] reductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 
 
 0.488
mms
Magnetic particle membrane specific GTPase P16; Function of strongly homologous gene; enzyme.
  
     0.451
XM1_4432
Putative poly-beta-hydroxybutyrate polymerase C; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.445
XM1_4500
Putative transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
       0.432
XM1_4501
Homologs of previously reported genes of unknown function.
       0.432
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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