STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_4500Putative transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (409 aa)    
Predicted Functional Partners:
XM1_4501
Homologs of previously reported genes of unknown function.
  
    0.826
ctaB-2
Protoheme IX farnesyltransferase 1; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
       0.681
mamO
Magnetosome protein MamO; Function of strongly homologous gene; putative enzyme.
     
 0.432
XM1_4044
Putative phage-related conserved protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.
 
  
 0.432
XM1_4497
Putative nucleotidyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.432
XM1_4498
Homologs of previously reported genes of unknown function.
       0.432
XM1_4499
Putative short-chain dehydrogenase/reductase SDR family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.432
XM1_0266
Putative transcriptional regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
  
 0.416
XM1_1350
Homologs of previously reported genes of unknown function.
  
     0.401
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.