STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_4555Conserved protein of unknown function (Tetratricopeptide-like helical 29-141); Homologs of previously reported genes of unknown function. (373 aa)    
Predicted Functional Partners:
XM1_4557
Putative glycosyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
    0.799
XM1_4556
Conserved protein of unknown function (Armadillo-type fold 90-314; Homologs of previously reported genes of unknown function.
       0.797
XM1_4554
Putative chemotaxis regulator CheY; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
       0.775
XM1_4558
Putative histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
  
 0.724
XM1_4560
Homologs of previously reported genes of unknown function.
  
  
 0.706
cheY-9
Chemotaxis protein CheY; Function of strongly homologous gene; regulator.
       0.664
XM1_4561
Conserved protein of unknown function (Glycoside hydrolase/deacetylase, beta/alpha-barrel 289-560); Homologs of previously reported genes of unknown function.
       0.664
ccmF
Heme lyase, CcmF subunit（Cytochrome c-type biogenesis protein Ccm,53-645） Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
 
 0.644
XM1_2525
Putative Cytochrome c-type biogenesis protein CcmF (modular protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 
 0.644
cycL
Cytochrome c-type biogenesis protein cycL; Possible subunit of a heme lyase.
  
  
 0.480
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.