STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mdlAMandelate racemase; Function of strongly homologous gene; enzyme; Belongs to the mandelate racemase/muconate lactonizing enzyme family. (356 aa)    
Predicted Functional Partners:
XM1_4569
Putative L-lactate dehydrogenase, FMN-linked, lldD-like; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
  
 0.983
lldD
L-lactate dehydrogenase, FMN-linked; Function of strongly homologous gene; enzyme.
 
  
 0.931
XM1_4568
Putative ABC transporter, branched-chain amino acid-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
       0.773
XM1_4567
Putative transcriptional regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
     0.612
XM1_0889
Putative dehydrogenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
  
 0.524
XM1_2693
Putative 2-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.
 
    0.451
ligK
4-hydroxy-4-methyl-2-oxoglutarate aldolase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
  
 0.441
XM1_3110
Putative Dihydrodipicolinate synthetase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the DapA family.
 
   
 0.439
XM1_2620
Putative Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily.
  
    0.438
dnaB-2
Replicative DNA helicase dnaB; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily.
  
    0.438
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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