STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_4575Peptidase, M50 family protein; Function of strongly homologous gene; enzyme. (701 aa)    
Predicted Functional Partners:
XM1_4579
Outer membrane efflux protein; Function of strongly homologous gene; transporter.
 
 
 0.955
XM1_4576
Membrane-fusion protein; Function of strongly homologous gene; transporter.
 
     0.948
XM1_4577
Putative membrane-fusion protein (or HlyD family secretion protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative cell process; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
     0.947
XM1_4578
Putative cadherin-like domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative membrane component.
 
    0.906
XM1_4580
Putative cadherin like domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative membrane component.
 
     0.877
XM1_0274
Conserved protein of unknown function, containing Outer membrane efflux protein domain; Homologs of previously reported genes of unknown function.
 
 
 0.862
XM1_2707
Putative Outer membrane efflux protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 
 0.862
XM1_3763
Outer membrane efflux protein; Function of strongly homologous gene; transporter.
 
 
 0.862
XM1_3770
Outer membrane efflux protein; Function of strongly homologous gene; structure.
 
 
 0.862
XM1_3791
Outer membrane protein (fragment); Function of strongly homologous gene; membrane component.
 
 
 0.862
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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