dctS protein (Magnetospirillum sp. XM1) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

dctS

C4-dicarboxylate transport sensor protein DctS; Function of strongly homologous gene; enzyme. (651 aa)

Predicted Functional Partners:

dctR

0.996

XM1_2061

0.884

XM1_3114

0.865

fixJ-2

0.857

XM1_4009

0.835

XM1_1590

0.806

XM1_3256

0.800

XM1_4319

0.797

XM1_0659

0.788

XM1_1478

0.788

Your Current Organism:

Magnetospirillum sp. XM1

NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
XM1_0659	XM1_1478	XM1_0659	XM1_1478	Conserved protein of unknown function （contain Sensor protein CheY-like domain） Homologs of previously reported genes of unknown function.	Putative Sensor protein gacS(CheY-like superfamily,782-900;905-1026;1045-1177); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.	0.965
XM1_0659	XM1_1590	XM1_0659	XM1_1590	Conserved protein of unknown function （contain Sensor protein CheY-like domain） Homologs of previously reported genes of unknown function.	Homologs of previously reported genes of unknown function.	0.977
XM1_0659	XM1_2061	XM1_0659	XM1_2061	Conserved protein of unknown function （contain Sensor protein CheY-like domain） Homologs of previously reported genes of unknown function.	Putative Signal transduction histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.973
XM1_0659	XM1_3114	XM1_0659	XM1_3114	Conserved protein of unknown function （contain Sensor protein CheY-like domain） Homologs of previously reported genes of unknown function.	Putative signal transduction histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.973
XM1_0659	XM1_3256	XM1_0659	XM1_3256	Conserved protein of unknown function （contain Sensor protein CheY-like domain） Homologs of previously reported genes of unknown function.	Protein of unknown function; No homology to any previously reported sequences.	0.977
XM1_0659	XM1_4009	XM1_0659	XM1_4009	Conserved protein of unknown function （contain Sensor protein CheY-like domain） Homologs of previously reported genes of unknown function.	Putative histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.	0.969
XM1_0659	XM1_4319	XM1_0659	XM1_4319	Conserved protein of unknown function （contain Sensor protein CheY-like domain） Homologs of previously reported genes of unknown function.	Putative signal transduction histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.977
XM1_0659	dctS	XM1_0659	XM1_4627	Conserved protein of unknown function （contain Sensor protein CheY-like domain） Homologs of previously reported genes of unknown function.	C4-dicarboxylate transport sensor protein DctS; Function of strongly homologous gene; enzyme.	0.788
XM1_1478	XM1_0659	XM1_1478	XM1_0659	Putative Sensor protein gacS(CheY-like superfamily,782-900;905-1026;1045-1177); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.	Conserved protein of unknown function （contain Sensor protein CheY-like domain） Homologs of previously reported genes of unknown function.	0.965
XM1_1478	XM1_1590	XM1_1478	XM1_1590	Putative Sensor protein gacS(CheY-like superfamily,782-900;905-1026;1045-1177); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.	Homologs of previously reported genes of unknown function.	0.979
XM1_1478	XM1_2061	XM1_1478	XM1_2061	Putative Sensor protein gacS(CheY-like superfamily,782-900;905-1026;1045-1177); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.	Putative Signal transduction histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.972
XM1_1478	XM1_3114	XM1_1478	XM1_3114	Putative Sensor protein gacS(CheY-like superfamily,782-900;905-1026;1045-1177); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.	Putative signal transduction histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.978
XM1_1478	XM1_3256	XM1_1478	XM1_3256	Putative Sensor protein gacS(CheY-like superfamily,782-900;905-1026;1045-1177); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.	Protein of unknown function; No homology to any previously reported sequences.	0.979
XM1_1478	XM1_4009	XM1_1478	XM1_4009	Putative Sensor protein gacS(CheY-like superfamily,782-900;905-1026;1045-1177); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.	Putative histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.	0.976
XM1_1478	XM1_4319	XM1_1478	XM1_4319	Putative Sensor protein gacS(CheY-like superfamily,782-900;905-1026;1045-1177); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.	Putative signal transduction histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.980
XM1_1478	dctS	XM1_1478	XM1_4627	Putative Sensor protein gacS(CheY-like superfamily,782-900;905-1026;1045-1177); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.	C4-dicarboxylate transport sensor protein DctS; Function of strongly homologous gene; enzyme.	0.788
XM1_1590	XM1_0659	XM1_1590	XM1_0659	Homologs of previously reported genes of unknown function.	Conserved protein of unknown function （contain Sensor protein CheY-like domain） Homologs of previously reported genes of unknown function.	0.977
XM1_1590	XM1_1478	XM1_1590	XM1_1478	Homologs of previously reported genes of unknown function.	Putative Sensor protein gacS(CheY-like superfamily,782-900;905-1026;1045-1177); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.	0.979
XM1_1590	XM1_2061	XM1_1590	XM1_2061	Homologs of previously reported genes of unknown function.	Putative Signal transduction histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.985
XM1_1590	XM1_3114	XM1_1590	XM1_3114	Homologs of previously reported genes of unknown function.	Putative signal transduction histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.983