STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dctQ-2TRAP-type C4-dicarboxylate transport system, small permease component DctQ; Function of strongly homologous gene; transporter. (233 aa)    
Predicted Functional Partners:
dctM-2
TRAP-type C4-dicarboxylate transport system, large permease component DctM; Function of strongly homologous gene; transporter.
 
 0.994
dctP
C4-dicarboxylate-binding periplasmic protein DctP; Function of strongly homologous gene; transporter.
 
  
 0.955
matA
Malonyl-CoA decarboxylase; Function of strongly homologous gene; enzyme.
  
 
 0.796
XM1_2692
Putative TRAP-type C4-dicarboxylate transport system; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
  
 0.788
dctS
C4-dicarboxylate transport sensor protein DctS; Function of strongly homologous gene; enzyme.
 
     0.573
XM1_1948
TRAP-type transport system periplasmic protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
  
 0.515
nnrE
Conserved protein of unknown function; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the r [...]
     
 0.444
dctR
C4-dicarboxylate transport transcriptional regulatory protein DctR; Function of strongly homologous gene; regulator.
       0.422
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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