XM1_4689 protein (Magnetospirillum sp. XM1) - STRING interaction network

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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[Homology]

Score

XM1_4689

Homologs of previously reported genes of unknown function. (447 aa)

Predicted Functional Partners:

XM1_4690

0.565

yfeX

0.561

greA

0.424

carB

0.407

Your Current Organism:

Magnetospirillum sp. XM1

NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
XM1_4689	XM1_4690	XM1_4689	XM1_4690	Homologs of previously reported genes of unknown function.	Putative Poly(3-hydroxyalkanoate) depolymerase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.565
XM1_4689	carB	XM1_4689	XM1_4693	Homologs of previously reported genes of unknown function.	Carbamoyl-phosphate synthase, large subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the CarB family.	0.407
XM1_4689	greA	XM1_4689	XM1_4692	Homologs of previously reported genes of unknown function.	Transcription elongation factor greA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.	0.424
XM1_4689	yfeX	XM1_4689	XM1_4691	Homologs of previously reported genes of unknown function.	Deferrochelatase/peroxidase YfeX; Function of strongly homologous gene; putative enzyme.	0.561
XM1_4690	XM1_4689	XM1_4690	XM1_4689	Putative Poly(3-hydroxyalkanoate) depolymerase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Homologs of previously reported genes of unknown function.	0.565
XM1_4690	carB	XM1_4690	XM1_4693	Putative Poly(3-hydroxyalkanoate) depolymerase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Carbamoyl-phosphate synthase, large subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the CarB family.	0.517
XM1_4690	greA	XM1_4690	XM1_4692	Putative Poly(3-hydroxyalkanoate) depolymerase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Transcription elongation factor greA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.	0.543
XM1_4690	yfeX	XM1_4690	XM1_4691	Putative Poly(3-hydroxyalkanoate) depolymerase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Deferrochelatase/peroxidase YfeX; Function of strongly homologous gene; putative enzyme.	0.752
carB	XM1_4689	XM1_4693	XM1_4689	Carbamoyl-phosphate synthase, large subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the CarB family.	Homologs of previously reported genes of unknown function.	0.407
carB	XM1_4690	XM1_4693	XM1_4690	Carbamoyl-phosphate synthase, large subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the CarB family.	Putative Poly(3-hydroxyalkanoate) depolymerase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.517
carB	greA	XM1_4693	XM1_4692	Carbamoyl-phosphate synthase, large subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the CarB family.	Transcription elongation factor greA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.	0.846
carB	yfeX	XM1_4693	XM1_4691	Carbamoyl-phosphate synthase, large subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the CarB family.	Deferrochelatase/peroxidase YfeX; Function of strongly homologous gene; putative enzyme.	0.544
greA	XM1_4689	XM1_4692	XM1_4689	Transcription elongation factor greA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.	Homologs of previously reported genes of unknown function.	0.424
greA	XM1_4690	XM1_4692	XM1_4690	Transcription elongation factor greA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.	Putative Poly(3-hydroxyalkanoate) depolymerase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.543
greA	carB	XM1_4692	XM1_4693	Transcription elongation factor greA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.	Carbamoyl-phosphate synthase, large subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the CarB family.	0.846
greA	yfeX	XM1_4692	XM1_4691	Transcription elongation factor greA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.	Deferrochelatase/peroxidase YfeX; Function of strongly homologous gene; putative enzyme.	0.576
yfeX	XM1_4689	XM1_4691	XM1_4689	Deferrochelatase/peroxidase YfeX; Function of strongly homologous gene; putative enzyme.	Homologs of previously reported genes of unknown function.	0.561
yfeX	XM1_4690	XM1_4691	XM1_4690	Deferrochelatase/peroxidase YfeX; Function of strongly homologous gene; putative enzyme.	Putative Poly(3-hydroxyalkanoate) depolymerase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.752
yfeX	carB	XM1_4691	XM1_4693	Deferrochelatase/peroxidase YfeX; Function of strongly homologous gene; putative enzyme.	Carbamoyl-phosphate synthase, large subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the CarB family.	0.544
yfeX	greA	XM1_4691	XM1_4692	Deferrochelatase/peroxidase YfeX; Function of strongly homologous gene; putative enzyme.	Transcription elongation factor greA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.	0.576