STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_4702Putative coenzyme PQQ synthesis protein E; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (372 aa)    
Predicted Functional Partners:
XM1_4701
Outer membrane protein and related peptidoglycan-associated lipo protein; Function of strongly homologous gene; transporter.
       0.784
nirG
Protein NirG; Function of strongly homologous gene; enzyme.
 
  
 0.670
nirH
Protein NirH; Function of strongly homologous gene; enzyme.
 
  
 0.664
nirD-2
Protein NirD; Function of strongly homologous gene; enzyme.
 
  
 0.661
nirL
Protein NirL; Function of strongly homologous gene; enzyme.
 
  
 0.660
XM1_2038
Putative Nitrite reductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
  
 0.640
nirF
Protein NirF; Function of strongly homologous gene; enzyme.
 
  
 0.605
XM1_2031
Cytochrome c, mono-and diheme variants; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter.
 
  
 0.597
XM1_0977
Putative Fe-S oxidoreductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.537
XM1_3113
TPR_REGION domain-containing protein; Homologs of previously reported genes of unknown function.
  
     0.512
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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