STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_4710Homologs of previously reported genes of unknown function. (365 aa)    
Predicted Functional Partners:
XM1_4709
Putative methyltransferase (fragment); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.779
XM1_4711
Conserved protein of unknown function (Flagellar FlaF 7-16); Homologs of previously reported genes of unknown function.
       0.529
XM1_4712
Homologs of previously reported genes of unknown function.
       0.447
XM1_3481
4Fe-4S ferredoxin, iron-sulfur binding; Function of strongly homologous gene; carrier.
  
   0.416
nosG
4Fe-4S ferredoxin, iron-sulfur binding; Function of strongly homologous gene; enzyme.
  
   0.407
fdx-2
4Fe-4S ferredoxin-type protein; Function of strongly homologous gene; carrier.
  
   0.407
napF
Ferredoxin-type protein, putative role in electron transfer to periplasmic nitrate reductase (NapA); Could be involved in the maturation of NapA, the catalytic subunit of the periplasmic nitrate reductase, before its export into the periplasm; Belongs to the NapF family.
  
   0.407
nuoI
NADH-quinone oxidoreductase subunit I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.
  
   0.407
yfhL
Ferredoxin (4Fe-4S cluster-containing protein) (fdx-like); Function of homologous gene experimentally demonstrated in an other organism; carrier.
  
   0.407
fdxB
Ferredoxin III 4[4Fe-4S], nif-specific; Function of homologous gene experimentally demonstrated in an other organism; carrier.
  
   0.407
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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