STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_47623-hydroxyacyl-CoA dehydrogenase; Function of strongly homologous gene; enzyme. (147 aa)    
Predicted Functional Partners:
XM1_2652
Putative Phenolpthiocerol synthesis polyketide synthase ppsA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 
 0.947
XM1_4764
Enoyl-CoA hydratase/carnithine racemase; Function of strongly homologous gene; enzyme.
  
    0.816
ivd
Acyl-CoA dehydrogenase/oxidase; Function of strongly homologous gene; enzyme.
     
 0.784
XM1_4763
Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta); Function of strongly homologous gene; enzyme.
       0.773
fabD
malonyl-CoA-[acyl-carrier-protein] transacylase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
 
 0.602
XM1_4759
Putative cyclic nucleotide-binding-like; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
       0.561
XM1_4760
Putative auxin efflux carrier; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier.
       0.561
XM1_4765
Acetyl/propionyl-CoA carboxylase, alpha chain; Function of strongly homologous gene; enzyme.
       0.479
XM1_1067
Putative hydrolase or acyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
   
 0.473
gdhB
NAD-specific glutamate dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
    0.425
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.