STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ctrATwo-component cell cycle transcriptional regulator ctrA; Function of strongly homologous gene; regulator. (238 aa)    
Predicted Functional Partners:
XM1_1255
Homologs of previously reported genes of unknown function.
  
 0.959
XM1_3529
Putative Sensor protein czcS; Member of a two-component regulatory system.
 
 0.790
XM1_0200
Signal transduction histidine kinase; Function of strongly homologous gene; enzyme.
 
 0.784
XM1_4009
Putative histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.
 
 
 0.784
XM1_1590
Homologs of previously reported genes of unknown function.
 
 
0.775
XM1_3256
Protein of unknown function; No homology to any previously reported sequences.
  
 
0.761
XM1_4319
Putative signal transduction histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 
0.761
XM1_2189
Putative Signal transduction histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
 0.758
XM1_3449
Signal transduction histidine kinase; Function of strongly homologous gene; enzyme.
 
 0.758
XM1_1591
Membrane protein of unknown function(PAS domain,112-232); No homology to any previously reported sequences.
  
 
 0.757
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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