STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XM1_4790Homologs of previously reported genes of unknown function. (119 aa)    
Predicted Functional Partners:
mutM
Formamidopyrimidine-DNA glycosylase mutM; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates.
       0.797
XM1_4102
Homologs of previously reported genes of unknown function.
  
     0.772
XM1_4103
Serine/threonine protein kinase; Function of strongly homologous gene; enzyme.
  
     0.770
XM1_4791
Enoyl-CoA hydratase-isomerase; Function of strongly homologous gene; enzyme; Belongs to the enoyl-CoA hydratase/isomerase family.
       0.764
XM1_1247
Homologs of previously reported genes of unknown function.
  
     0.762
XM1_2843
Uncharacterized protein; Homologs of previously reported genes of unknown function.
  
     0.762
XM1_0668
Homologs of previously reported genes of unknown function.
  
     0.760
XM1_3147
Conserved protein of unknown function(containing Cytochrome c assembly protein,62-264); Homologs of previously reported genes of unknown function.
  
     0.749
XM1_0874
Homologs of previously reported genes of unknown function.
  
     0.744
XM1_3702
Protein of unknown function; No homology to any previously reported sequences.
  
     0.735
Your Current Organism:
Magnetospirillum sp. XM1
NCBI taxonomy Id: 1663591
Other names: M. sp. XM-1, Magnetospirillum sp. XM-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.