KOY85647.1 protein (bacterium 3363) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KOY85647.1

Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (294 aa)

Predicted Functional Partners:

KOY85646.1

0.951

KOY87975.1

0.934

KOY86902.1

0.797

atpD

0.694

atpA

0.689

KOY87568.1

0.622

KOY87631.1

0.577

KOY85648.1

0.541

KOY85649.1

0.541

KOY84680.1

0.520

Your Current Organism:

bacterium 3363

NCBI taxonomy Id: 1664068
Other names: b. 336/3, bacterium 336/3

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KOY84680.1	KOY85647.1	AD998_19800	AD998_05320	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.520
KOY84680.1	KOY86902.1	AD998_19800	AD998_12785	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.838
KOY84680.1	KOY87568.1	AD998_19800	AD998_16780	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP synthase subunit epsilon; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.622
KOY84680.1	KOY87631.1	AD998_19800	AD998_17165	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Molybdopterin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.600
KOY84680.1	KOY87975.1	AD998_19800	AD998_19190	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Gliding motility-associated ABC transporter permease subunit GldF; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.948
KOY84680.1	atpA	AD998_19800	AD998_14655	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP F0F1 synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.	0.689
KOY84680.1	atpD	AD998_19800	AD998_16775	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.	0.702
KOY85646.1	KOY85647.1	AD998_05315	AD998_05320	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.951
KOY85646.1	KOY85648.1	AD998_05315	AD998_05325	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cro/Cl family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.541
KOY85646.1	KOY85649.1	AD998_05315	AD998_05330	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.541
KOY85647.1	KOY84680.1	AD998_05320	AD998_19800	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.520
KOY85647.1	KOY85646.1	AD998_05320	AD998_05315	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.951
KOY85647.1	KOY85648.1	AD998_05320	AD998_05325	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cro/Cl family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.541
KOY85647.1	KOY85649.1	AD998_05320	AD998_05330	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.541
KOY85647.1	KOY86902.1	AD998_05320	AD998_12785	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.797
KOY85647.1	KOY87568.1	AD998_05320	AD998_16780	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP synthase subunit epsilon; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.622
KOY85647.1	KOY87631.1	AD998_05320	AD998_17165	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Molybdopterin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.577
KOY85647.1	KOY87975.1	AD998_05320	AD998_19190	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Gliding motility-associated ABC transporter permease subunit GldF; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.934
KOY85647.1	atpA	AD998_05320	AD998_14655	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP F0F1 synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.	0.689
KOY85647.1	atpD	AD998_05320	AD998_16775	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.	0.694