STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KOY85941.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (232 aa)    
Predicted Functional Partners:
KOY87608.1
Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.715
KOY85940.1
YHS domain protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.668
KOY86148.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.644
KOY87925.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 0.497
KOY85939.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.445
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.439
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.435
KOY86517.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.428
Your Current Organism:
bacterium 3363
NCBI taxonomy Id: 1664068
Other names: b. 336/3, bacterium 336/3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.